# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "tima" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'tima: Taxonomically Informed Metabolite Annotation'
version: 2.11.0
doi: 10.5281/zenodo.5797920
identifiers:
- type: doi
  value: 10.32614/CRAN.package.tima
- type: url
  value: https://taxonomicallyinformedannotation.github.io/tima-shinylive
abstract: This package provides the infrastructure to perform Taxonomically Informed
  Metabolite Annotation.
authors:
- family-names: Rutz
  given-names: Adriano
  email: adafede@gmail.com
  orcid: https://orcid.org/0000-0003-0443-9902
preferred-citation:
  type: manual
  title: 'tima: Taxonomically Informed Metabolite Annotation'
  authors:
  - family-names: Rutz
    given-names: Adriano
    email: adafede@gmail.com
    orcid: https://orcid.org/0000-0003-0443-9902
  year: '2024'
  notes: R package, version 2.11.0
  doi: 10.5281/zenodo.5797920
repository: https://taxonomicallyinformedannotation.r-universe.dev
repository-code: https://github.com/taxonomicallyinformedannotation/tima
commit: 3974c3202fbc8e60d356cb6837cdc95cb0f9d146
url: https://taxonomicallyinformedannotation.github.io/tima
contact:
- family-names: Rutz
  given-names: Adriano
  email: adafede@gmail.com
  orcid: https://orcid.org/0000-0003-0443-9902
keywords:
- metabolite annotation
- chemotaxonomy
- scoring system
- natural products
- computational metabolomics
- taxonomic distance
- specialized metabolome
references:
- type: article
  title: Taxonomically Informed Scoring Enhances Confidence in Natural Products Annotation
  authors:
  - family-names: Rutz
    given-names: Adriano
    orcid: https://orcid.org/0000-0003-0443-9902
  - family-names: Dounoue-Kubo
    given-names: Miwa
  - family-names: Ollivier
    given-names: Simon
    orcid: https://orcid.org/0000-0002-7671-1736
  - family-names: Bisson
    given-names: Jonathan
    orcid: https://orcid.org/0000-0003-1640-9989
  - family-names: Bagheri
    given-names: Mohsen
  - family-names: Saesong
    given-names: Tongchai
  - family-names: Ebrahimi
    given-names: Samad Nejad
    orcid: https://orcid.org/0000-0003-2167-8032
  - family-names: Ingkaninan
    given-names: Kornkanok
    orcid: https://orcid.org/0000-0002-4415-8489
  - family-names: Wolfender
    given-names: Jean-Luc
    orcid: https://orcid.org/0000-0002-0125-952X
  - family-names: Allard
    given-names: Pierre-Marie
    orcid: https://orcid.org/0000-0003-3389-2191
  journal: Frontiers in Plant Science
  year: '2019'
  volume: '10'
  url: https://doi.org/10.3389/fpls.2019.01329
  keywords:
  - metabolite annotation
  - chemotaxonomy
  - scoring system
  - natural products
  - computational metabolomics
  - taxonomic distance
  - specialized metabolome
  doi: 10.3389/FPLS.2019.01329
  issn: 1664-462X